Source: Estonian Football Association(in Estonian) Rules for classification: Points; Least withdrawals or annulled matches; Overall wins; Head-to-head points; Head-to-head goal difference; Goal difference; Goals scored. If two or more teams on the top have the same number of points by the end of the season, the aforementioned rules will not apply and additional game(s) will be played to determine the champions. (C) Champions; (O) Play-off winners; (P) Promoted; (R) Relegated Notes:
At season's end, the runners-up of the 2013 Esiliiga will participate in a two-legged play-off with the 9th place club of the 2013 Meistriliiga for the spot in next year's competition.
At season's end, the 8th place club of the 2013 Esiliiga will participate in a two-legged play-off with the 3rd place club of the 2013 Esiliiga B for the spot in next year's competition.