AMAP
AMAP is a multiple sequence alignment program based on sequence annealing.[1] This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensitivity-specificity tradeoff. The program can be used through the AMAP web server or as a standalone program which can be installed with the source code. Input/OutputThis program accepts sequences in FASTA format. The output format includes: FASTA format, Clustal. References
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